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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Tied for 23rd | Tony Orduno | 18th | 23rd | |
| First Basemen | Tom Gagne | 2nd | Jarrett Schack | Tied for 11th | 1st |
| Second Basemen | Doug McGregor | 1st | Jose Galvan | 1st | 1st |
| Third Basemen | Juan Cruz | 4th | Tied for 22nd | 16th | |
| Shortstops | Justin Cooper | 16th | Bill Granger | Tied for 16th | 12th |
| Left Fielders | Nick Vera | 1st | Tied for 19th | 11th | |
| Center Fielders | Victor Ortiz | 1st | 24th | 24th | |
| Right Fielders | Jeff Braemer | Tied for 1st | T.J. Garris | 10th | 2nd |
| Starting Pitchers | Jeremy Todd | 1st | Kyle Witt | 24th | 10th |
| Relievers | Emilio Lorenzana | 2nd | Marcos Aragon | 7th | 3rd |
| Closers | Willie Ayala | 2nd | Marcos Aragon | 6th | 2nd |
